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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42655883_42655992_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42655883 - 42655992
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCTCTCATACCT
Flanking Amino Acid:
WAETFSRCNSGTYNNQYMVL
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
65.8
0.36
0.9
58.6
36.4
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
47.9
-0
1.9
66.66
43.8

Associated Gene:

Gene:
PLBD1
Ensembl Gene ID:
ENSAPLG00000002764
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002814
42625817 - 42662022
36206