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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42656134_42659977_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42656134 - 42659977
Intron Length:
3844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGCT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCCGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTCCAAGTGACT
Flanking Amino Acid:
YSDQTNVLRKGYWPSYNIPF
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
74.4
33.9
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
67.8
0.4
1
66.4
40.7
Minor 5ss
33.1
-1.9
3.4
48.8
46.8
Minor BPS
43.1
-0.4
2.4
67.02
43.4

Associated Gene:

Gene:
PLBD1
Ensembl Gene ID:
ENSAPLG00000002764
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002814
42625817 - 42662022
36206