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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42678979_42697154_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42678979 - 42697154
Intron Length:
18176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TTTTGCAAAATG
Flanking Amino Acid:
NKRTAEGTTQSGKVAGSNSG
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.8
38.3
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
47.1
-0.3
2.3
63.85
44.5

Associated Gene:

Gene:
ATF7IP
Ensembl Gene ID:
ENSAPLG00000002466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002500
42670287 - 42726317
56031