About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42697223_42698839_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42697223 - 42698839
Intron Length:
1617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGACCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
AATTTCTTGACC
Flanking Amino Acid:
EPPTITAPRAENQTSRPATD
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
70.7
0.47
0.9
66.3
35.4
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
74.8
0.76
1.1
76.56
33

Associated Gene:

Gene:
ATF7IP
Ensembl Gene ID:
ENSAPLG00000002466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041408
42670287 - 42718505
48219
ENSAPLT00000031250
42694277 - 42726317
32041
ENSAPLT00000019911
42694277 - 42726317
32041
ENSAPLT00000002500
42670287 - 42726317
56031