About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42701688_42702343_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42701688 - 42702343
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
AKEDLKKRQENPPNSPLSPV
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
78
0.63
1
77.2
37.1
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
ATF7IP
Ensembl Gene ID:
ENSAPLG00000002466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031250
42694277 - 42726317
32041
ENSAPLT00000019911
42694277 - 42726317
32041
ENSAPLT00000002500
42670287 - 42726317
56031
ENSAPLT00000041408
42670287 - 42718505
48219