Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42702410_42702814_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42702410 - 42702814

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCCATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TTCTTCCCATTT

Flanking Amino Acid:

RHKTVLTELQAKVARLTKRF

Intron Amino Acid Position:

520

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

81.3

32.8

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

76.2

0.59

0.8

74.7

29.4

Minor 5ss

-2.4

3.2

40.6

45.6

Minor BPS

45.8

-0.2

68.16

43.2

Associated Gene:

Gene:

ATF7IP

Ensembl Gene ID:

ENSAPLG00000002466

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031250

42694277 - 42726317

32041

ENSAPLT00000019911

42694277 - 42726317

32041

ENSAPLT00000002500

42670287 - 42726317

56031

ENSAPLT00000041408

42670287 - 42718505

48219