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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42704316_42706377_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42704316 - 42706377
Intron Length:
2062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTAATTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTATCTAATT
Flanking Amino Acid:
HKDDDKHTERSEVSRRKRSK
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
82.5
29.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.1
0.59
1
72.9
41.9
Minor 5ss
45.2
-0.5
2.6
59.7
39.1
Minor BPS
63.1
0.49
1.8
85.6
34.5

Associated Gene:

Gene:
ATF7IP
Ensembl Gene ID:
ENSAPLG00000002466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041408
42670287 - 42718505
48219
ENSAPLT00000019911
42694277 - 42726317
32041
ENSAPLT00000002500
42670287 - 42726317
56031