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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42706465_42717456_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42706465 - 42717456
Intron Length:
10992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCAGCATAAATA
Flanking Amino Acid:
VILSNKSSLPEEMEEERKSK
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
74.3
0.55
0.9
67.8
37.8
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
46.7
-0.2
2
56.78
42.9

Associated Gene:

Gene:
ATF7IP
Ensembl Gene ID:
ENSAPLG00000002466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041408
42670287 - 42718505
48219
ENSAPLT00000019911
42694277 - 42726317
32041
ENSAPLT00000002500
42670287 - 42726317
56031