About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42774280_42774362_F

Intron Information:

Intron Rank:
144159
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
42774280 - 42774362
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTCTGTACT
5'SS Class:
weak_major
3'SS Sequence:
TTGTCTGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
GTAACTTCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.4
0.08
1.4
61
43.4
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
78.8
0.65
0.9
72.7
37.6
Minor 5ss
41.9
-0.9
2.6
53.7
42.9
Minor BPS
48.9
-0
1.9
66.79
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027701
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022634
42773768 - 42776292
2525