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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42774695_42775862_F

Intron Information:

Intron Rank:
144161
Intron Class:
major
Intron Phase:
Intron Coordinates:
42774695 - 42775862
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85.9
0.81
0.8
83.8
30.8
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
62.5
0.39
1.6
72.5
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027701
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022634
42773768 - 42776292
2525