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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42785189_42786432_R

Intron Information:

Intron Rank:
145983
Intron Class:
major
Intron Phase:
Intron Coordinates:
42785189 - 42786432
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
ATCATATCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCATCATATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.6
0.53
0.9
66
39.3
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
49.8
0.06
1.9
73.14
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021353
42784832 - 42787466
2635