About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42786640_42787108_R

Intron Information:

Intron Rank:
145984
Intron Class:
major
Intron Phase:
Intron Coordinates:
42786640 - 42787108
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
CTGTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTGCTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
68.8
43.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
82
0.72
0.9
75.8
37.8
Minor 5ss
37.1
-1.5
3
40.5
45.5
Minor BPS
48.3
-0
2.3
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021353
42784832 - 42787466
2635