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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4293621_4295698_F

Intron Information:

Intron Rank:
147227
Intron Class:
major
Intron Phase:
Intron Coordinates:
4293621 - 4295698
Intron Length:
2078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTCCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.1
0.54
0.9
70.8
34.8
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
65.1
0.47
1.6
75.4
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029293
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040881
4290366 - 4295754
5389
ENSAPLT00000031349
4289287 - 4295929
6643