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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42982262_43022769_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42982262 - 43022769
Intron Length:
40508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TCTCTCCTACAG
Flanking Amino Acid:
KRIYQSNMLNRYLINVTFEG
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
82.2
0.72
0.7
76.1
26.1
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
43.2
-0.6
2
50.24
43.6

Associated Gene:

Gene:
GRIN2B
Ensembl Gene ID:
ENSAPLG00000002441
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002456
42933096 - 43095618
162523