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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43068989_43072081_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43068989 - 43072081
Intron Length:
3093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCAATCACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAATC
Flanking Amino Acid:
GYNRCLADGREPGGPSFTIG
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
65.4
0.35
0.9
56.1
39.7
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
67.7
0.53
1.5
75.08
35.4

Associated Gene:

Gene:
GRIN2B
Ensembl Gene ID:
ENSAPLG00000002441
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002456
42933096 - 43095618
162523