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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43087086_43089208_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43087086 - 43089208
Intron Length:
2123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCTT
5'SS Class:
major
3'SS Sequence:
TGTACCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TTTTTTGTACCT
Flanking Amino Acid:
VDDALFSLKTGKLDAFIYDA
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.5
42.7
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
71.8
0.49
1
65.7
40.8
Minor 5ss
30.8
-2.2
3.5
39.2
46.1
Minor BPS
54.3
0.21
2.2
82.56
39.6

Associated Gene:

Gene:
GRIN2B
Ensembl Gene ID:
ENSAPLG00000002441
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002456
42933096 - 43095618
162523