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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43089397_43091209_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43089397 - 43091209
Intron Length:
1813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CATGTCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATGTCTTTACAG
Flanking Amino Acid:
DLAILQLFGDGEMEELEALW
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79.4
0.66
0.9
72.3
37.5
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
52.4
-0
1.8
58.58
43.4

Associated Gene:

Gene:
GRIN2B
Ensembl Gene ID:
ENSAPLG00000002441
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002456
42933096 - 43095618
162523