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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43091449_43093710_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43091449 - 43093710
Intron Length:
2262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATTT
Flanking Amino Acid:
KPGVVFSISRGIYSCIHGVA
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
84.1
0.77
0.8
81.5
28.8
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
54.8
0.23
1.8
77.31
39.5

Associated Gene:

Gene:
GRIN2B
Ensembl Gene ID:
ENSAPLG00000002441
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002456
42933096 - 43095618
162523