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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43259309_43261801_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43259309 - 43261801
Intron Length:
2493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCATCT
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATTATTTTACAA
Flanking Amino Acid:
LSCEESMEGPEEKCRSFIEL
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
66
40.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
44.7
-0.6
3.2
66
45.1
Minor BPS
49.5
-0
1.7
63.05
37.2

Associated Gene:

Gene:
GSG1
Ensembl Gene ID:
ENSAPLG00000001970
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001968
43258990 - 43266995
8006