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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43261850_43264029_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43261850 - 43264029
Intron Length:
2180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGATTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GGTTTCTGATTC
Flanking Amino Acid:
FIELSPPAERGILWLSLGSE
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
70.3
0.46
1
66.2
40.5
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
49.6
-0
1.7
60.48
38.7

Associated Gene:

Gene:
GSG1
Ensembl Gene ID:
ENSAPLG00000001970
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001968
43258990 - 43266995
8006