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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43264183_43264514_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43264183 - 43264514
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CCTTCCATAACT
Flanking Amino Acid:
AFAAVSSVLSGLLGMVAHMM
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
65
0.37
1.3
76.1
38
Major PPT
76.1
0.59
0.8
74.9
28.8
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
72
0.77
1.7
84.77
41.8

Associated Gene:

Gene:
GSG1
Ensembl Gene ID:
ENSAPLG00000001970
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001968
43258990 - 43266995
8006