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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43264627_43265679_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43264627 - 43265679
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTATGTGAG
5'SS Class:
major
3'SS Sequence:
TTCTCTCCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
CGTATGTTATTC
Flanking Amino Acid:
PHSWDYGWAFYMAWASFTCC
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1
60.4
38.4
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
81.9
0.72
0.7
77.8
24.2
Minor 5ss
40
-1.1
3.1
49.8
42.2
Minor BPS
42.5
-0.5
2.2
50.72
40.7

Associated Gene:

Gene:
GSG1
Ensembl Gene ID:
ENSAPLG00000001970
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001968
43258990 - 43266995
8006