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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43269140_43270284_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43269140 - 43270284
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGATGGGCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGCCAATATTT
Flanking Amino Acid:
NATDKVIASAIGINDLQKDA
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.5
28.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
56.9
0.16
1.2
49.7
47.8
Minor 5ss
32.3
-2
2.6
35.1
34.3
Minor BPS
45.5
-0.2
2
67.78
42.9

Associated Gene:

Gene:
FAM234B
Ensembl Gene ID:
ENSAPLG00000015659
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016373
43266860 - 43287649
20790