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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43275781_43276138_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43275781 - 43276138
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCATTTTTACTC
Flanking Amino Acid:
RGAIYILFGFGNVQAVALRD
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.8
37.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76
0.58
0.9
72.7
32.1
Minor 5ss
32.4
-2
3.1
39.7
40.1
Minor BPS
54.9
0.13
1.6
61.67
38.8

Associated Gene:

Gene:
FAM234B
Ensembl Gene ID:
ENSAPLG00000015659
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016373
43266860 - 43287649
20790