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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43276287_43276963_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43276287 - 43276963
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAT
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
ACTGCCAGAAAT
Flanking Amino Acid:
IVVLALKETQPDVFFVLVSG
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.1
42.9
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
30.7
-2.2
3.6
46.8
48.5
Minor BPS
47
-0.1
1.9
65.75
44.2

Associated Gene:

Gene:
FAM234B
Ensembl Gene ID:
ENSAPLG00000015659
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016373
43266860 - 43287649
20790