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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43277095_43278606_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43277095 - 43278606
Intron Length:
1512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
GTTCTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
TTCTTCCCACAG
Flanking Amino Acid:
KFLSLLSASTGKTIWTLNSI
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
78.7
0.65
0.8
72.8
32.1
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
40.6
-0.8
2.1
48.99
44.5

Associated Gene:

Gene:
FAM234B
Ensembl Gene ID:
ENSAPLG00000015659
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016373
43266860 - 43287649
20790