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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43282162_43287612_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43282162 - 43287612
Intron Length:
5451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CGTCTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TAATGCTTTATT
Flanking Amino Acid:
TVLSRALKLPGKKSPDLGEY
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.3
39.8
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
75.9
0.58
0.8
73
31.8
Minor 5ss
23.7
-3
3.3
23.4
37.6
Minor BPS
53.7
0.2
2.1
73.78
43.3

Associated Gene:

Gene:
FAM234B
Ensembl Gene ID:
ENSAPLG00000015659
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016373
43266860 - 43287649
20790