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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43305300_43305435_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43305300 - 43305435
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
CGCCTTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGCTCCTGACCC
Flanking Amino Acid:
PHRVLRRGEKEQLSYEEREC
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
67.5
37.8
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
71.9
0.49
0.8
68.8
31.7
Minor 5ss
28.2
-2.5
3.7
40.6
46
Minor BPS
51.7
0.03
1.8
60.92
43.8

Associated Gene:

Gene:
HEBP1
Ensembl Gene ID:
ENSAPLG00000015584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016239
43305222 - 43310490
5269