Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43305575_43306905_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43305575 - 43306905

Intron Length:

1331

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGAGGC

5'SS Class:

major

3'SS Sequence:

GTGTCTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TCTGTAGTAATT

Flanking Amino Acid:

LKYVGGSNDKGVGMGMTAPV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

60.3

39.3

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

80.6

0.69

0.9

77.4

36.9

Minor 5ss

24.9

-2.9

3.1

24.4

37.1

Minor BPS

45.9

-0.2

2.3

67.73

43.9

Associated Gene:

Gene:

HEBP1

Ensembl Gene ID:

ENSAPLG00000015584

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016239

43305222 - 43310490

5269