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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43307087_43308403_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43307087 - 43308403
Intron Length:
1317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGGAAC
5'SS Class:
major
3'SS Sequence:
GGCTTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGCTGCTCAGCA
Flanking Amino Acid:
EERQALTIYSTQFGGYAKEV
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.3
73
38.2
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
79.1
0.66
0.9
72.7
37.5
Minor 5ss
33.9
-1.8
3.2
42.2
38.2
Minor BPS
46.4
-0.2
2.2
60.35
45.4

Associated Gene:

Gene:
HEBP1
Ensembl Gene ID:
ENSAPLG00000015584
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016239
43305222 - 43310490
5269