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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43328344_43329038_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43328344 - 43329038
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTTTTGAAAG
Flanking Amino Acid:
SPYSSHFQLKTIDTRNDFSI
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.1
0.77
0.8
81.1
30.1
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
56.4
0.06
1.6
63.54
38.2

Associated Gene:

Gene:
DDX47
Ensembl Gene ID:
ENSAPLG00000015324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016227
43327549 - 43350434
22886