About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43331068_43350380_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43331068 - 43350380
Intron Length:
19313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TAGCCTCTGACT
Flanking Amino Acid:
EALGVRKKVAEL*
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
73
33.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
25.9
-2.8
3
30.2
43.1
Minor BPS
52.7
0.17
1.7
70.31
40.6

Associated Gene:

Gene:
DDX47
Ensembl Gene ID:
ENSAPLG00000015324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016011
43330095 - 43358036
27942
ENSAPLT00000016227
43327549 - 43350434
22886