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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4335556_4358876_F

Intron Information:

Intron Rank:
146335
Intron Class:
major
Intron Phase:
Intron Coordinates:
4335556 - 4358876
Intron Length:
23321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
95.5
1.02
0.5
95.9
14.1
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047573
4335345 - 4364651
29307