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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43357143_43357667_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43357143 - 43357667
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CACTAATATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTAATA
Flanking Amino Acid:
GAAPQSFKELGVTDVLCEAC
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.9
0.38
1
62.7
41.9
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
64.4
0.45
1.9
81.62
33.2

Associated Gene:

Gene:
DDX47
Ensembl Gene ID:
ENSAPLG00000015324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028086
43335056 - 43358036
22981
ENSAPLT00000016011
43330095 - 43358036
27942