Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43450548_43450885_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

43450548 - 43450885

Intron Length:

338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTTAT

U12 Branch Point Sequence:

GTTATGTTATCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

76.8

33.4

Major BPS

72.5

0.56

1.2

63.4

Major PPT

81.8

0.71

0.8

72.8

37.5

Minor 5ss

31.6

-2.1

3.1

39.6

45.9

Minor BPS

48.3

-0

2.3

72.94

43.8

Associated Gene:

Gene:

ART4

Ensembl Gene ID:

ENSAPLG00000004034

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027372

43446136 - 43450984

4849