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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43455236_43457223_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43455236 - 43457223
Intron Length:
1988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCTCTCTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GCATCTCTAACC
Flanking Amino Acid:
EDPSGPPSAASIKIKKEVAN
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
74.9
0.56
0.9
73
31.9
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
57.9
0.23
1.7
64.69
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004025
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004120
43453636 - 43459181
5546