Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43457260_43459114_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43457260 - 43459114

Intron Length:

1855

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGGA

5'SS Class:

strong_major

3'SS Sequence:

GTCTGTCTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAC

U12 Branch Point Sequence:

TCTGTCTTACAG

Flanking Amino Acid:

ALAALCCCEKDPEDPSGPPS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

75.2

35.1

Major BPS

66.1

0.4

1.2

69.1

37.9

Major PPT

79.3

0.66

0.9

72.1

Minor 5ss

29.8

-2.3

3.3

38.8

46.3

Minor BPS

48.5

-0.2

1.9

55.39

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004025

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004120

43453636 - 43459181

5546