Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43464670_43465805_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43464670 - 43465805

Intron Length:

1136

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGAGAC

5'SS Class:

major

3'SS Sequence:

CTTGTCTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATATAC

U12 Branch Point Sequence:

TACTCTGCAAAC

Flanking Amino Acid:

HESMESHEYLNPFINRRRAN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.51

1.1

63.6

35.2

Major BPS

61.6

0.29

37.6

Major PPT

82.5

0.73

0.8

80.4

31.6

Minor 5ss

32.9

-1.9

3.4

47.3

42.5

Minor BPS

44.6

-0.4

2.2

56.77

41.8

Associated Gene:

Gene:

MGP

Ensembl Gene ID:

ENSAPLG00000003895

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003988

43463591 - 43468961

5371