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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43465842_43466768_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43465842 - 43466768
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAT
U12 Branch Point Sequence:
AGTGTCTTACTC
Flanking Amino Acid:
ATLIMAATCYESHESMESHE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
36.5
Major BPS
66.8
0.42
1.4
75.9
36.3
Major PPT
87.1
0.84
0.7
80.8
31.2
Minor 5ss
33.1
-1.9
3.5
45
45.5
Minor BPS
51.3
0.02
1.7
60.5
39.4

Associated Gene:

Gene:
MGP
Ensembl Gene ID:
ENSAPLG00000003895
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003988
43463591 - 43468961
5371