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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43466920_43468891_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
43466920 - 43468891
Intron Length:
1972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
GCTAATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
73.3
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76.1
0.59
1
68.9
41.5
Minor 5ss
35.8
-1.6
2.9
44.1
38.5
Minor BPS
66.9
0.53
1.6
76.77
33.9

Associated Gene:

Gene:
MGP
Ensembl Gene ID:
ENSAPLG00000003895
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003988
43463591 - 43468961
5371