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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43492277_43495228_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43492277 - 43495228
Intron Length:
2952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATTACC
5'SS Class:
major
3'SS Sequence:
ATGCTTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGCCAT
U12 Branch Point Sequence:
TTTTCTCTCTCT
Flanking Amino Acid:
LRLVTEYNPVTAVGVMHSSL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
73.4
35.3
Major BPS
48.8
-0
1.5
58.2
48.3
Major PPT
69.9
0.45
1
66
40.2
Minor 5ss
37.2
-1.4
2.6
44.3
37
Minor BPS
41.4
-0.5
3.7
80.25
42

Associated Gene:

Gene:
ERP27
Ensembl Gene ID:
ENSAPLG00000017450
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023675
43483513 - 43495285
11773