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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43503124_43504023_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43503124 - 43504023
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TCCTTGTGGATT
Flanking Amino Acid:
VQHTYRTGVKVDKATFMVGS
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
44.9
-0.3
2.1
62.24
42.8

Associated Gene:

Gene:
ARHGDIB
Ensembl Gene ID:
ENSAPLG00000024731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038878
43498808 - 43527341
28534