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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43504088_43505550_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43504088 - 43505550
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGACTCTTAATT
Flanking Amino Acid:
VEYRVKIHFKVNRDIVSGLK
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.7
0.8
0.8
84
30.6
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
70.9
0.73
1.2
78.98
36.8

Associated Gene:

Gene:
ARHGDIB
Ensembl Gene ID:
ENSAPLG00000024731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038878
43498808 - 43527341
28534