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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43505628_43506492_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43505628 - 43506492
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
AATGGCTTGATC
Flanking Amino Acid:
APGPITMDLTGDLEALKKET
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
82.5
0.73
0.7
76.4
25.6
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
49.6
-0
1.9
60.27
39.5

Associated Gene:

Gene:
ARHGDIB
Ensembl Gene ID:
ENSAPLG00000024731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038878
43498808 - 43527341
28534