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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43506577_43507154_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43506577 - 43507154
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
TTCCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGCAA
U12 Branch Point Sequence:
GCAACCTGAGAG
Flanking Amino Acid:
SLLGDGPVVADPTAPNVVVT
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
60.8
0.27
1.4
71.6
36.4
Major PPT
78.5
0.64
0.7
73.3
24.9
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
42.2
-0.7
1.8
40.62
42.4

Associated Gene:

Gene:
ARHGDIB
Ensembl Gene ID:
ENSAPLG00000024731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038878
43498808 - 43527341
28534