About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43507344_43507596_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43507344 - 43507596
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CTCTGCTACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
ATACCACTGACT
Flanking Amino Acid:
PRLLPAREGWYQVIMTEKTQ
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.7
45.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
69.6
0.44
0.9
61.4
39.2
Minor 5ss
39.8
-1.1
3
51.2
45.1
Minor BPS
48.4
-0
1.9
70.52
39.4

Associated Gene:

Gene:
ARHGDIB
Ensembl Gene ID:
ENSAPLG00000024731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038878
43498808 - 43527341
28534