About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43510853_43513050_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
43510853 - 43513050
Intron Length:
2198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTATC
5'SS Class:
major
3'SS Sequence:
CCAACTGCCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTCCACCAACT
Flanking Amino Acid:
WFLSSHLLSMLKAERCEQRR
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
74.2
36.2
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
49.6
-0
1.1
47.3
34.1
Minor 5ss
33.9
-1.8
3
41.8
39.3
Minor BPS
50
0.08
2.1
80.59
40.2

Associated Gene:

Gene:
ARHGDIB
Ensembl Gene ID:
ENSAPLG00000024731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038878
43498808 - 43527341
28534