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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43513138_43527104_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43513138 - 43527104
Intron Length:
13967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTGGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCCAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CAGTTCAAAACC
Flanking Amino Acid:
GTSRSISSVEINDVIPQWDA
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
68.2
42.9
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
81.7
0.71
0.8
78.7
28.5
Minor 5ss
29.4
-2.4
3.3
41.3
45.1
Minor BPS
46.7
-0.2
1.9
55.6
42.8

Associated Gene:

Gene:
ARHGDIB
Ensembl Gene ID:
ENSAPLG00000024731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038878
43498808 - 43527341
28534