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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43527221_43527508_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43527221 - 43527508
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TTCTCTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
CACCCCTCACCT
Flanking Amino Acid:
KSKPPKKGVKGFGDDIPGME
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
39.1
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
76.6
0.6
0.7
70
30.9
Minor 5ss
29.1
-2.4
3.4
30.5
42.8
Minor BPS
48
-0
1.9
62.78
46.8

Associated Gene:

Gene:
PDE6H
Ensembl Gene ID:
ENSAPLG00000025333
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019349
43527081 - 43528528
1448