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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43527550_43528451_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43527550 - 43528451
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CATTTCTGATTC
Flanking Amino Acid:
DIPGMEGLGTDITVICPWEA
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.9
0.78
0.8
79.6
32.4
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
49.5
-0
1.7
59.7
39.8

Associated Gene:

Gene:
PDE6H
Ensembl Gene ID:
ENSAPLG00000025333
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019349
43527081 - 43528528
1448